si:ch211-11n16.2 si:ch211-11n16.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-11n16.2provided by ZNC
Official Full Name: si:ch211-11n16.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-041008-77
See related: Ensembl:ENSDARG00000099779 AllianceGenome:ZFIN:ZDB-GENE-041008-77
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7136055
Summary: Predicted to enable GTP binding activity; GTPase activity; and metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 15

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (14378835..14418138)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (14442880..14483416)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables 1-phosphatidylinositol binding	IBA Inferred from Biological aspect of Ancestor more info
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info
enables phosphatidylinositol-3,4,5-trisphosphate binding	IBA Inferred from Biological aspect of Ancestor more info
enables phosphatidylinositol-3,4-bisphosphate binding	IBA Inferred from Biological aspect of Ancestor more info
enables phosphatidylinositol-3-phosphate binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in lipid droplet formation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
is_active_in lipid droplet	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger FYVE domain-containing protein 1

Names: zinc finger FYVE domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007126.7 Reference GRCz11 Primary Assembly

Range

14378835..14418138

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_686504.9 → XP_691596.6 zinc finger FYVE domain-containing protein 1 isoform X1

UniProtKB/TrEMBL

A0A0R4IQI6, A0A8N7UT50

Related

ENSDARP00000138454.1, ENSDART00000160145.2

Conserved Domains (3) summary

cd15734
Location:588 → 648

FYVE_ZFYV1; FYVE domains found in zinc finger FYVE domain-containing protein 1 (ZFYV1) and similar proteins

pfam01363
Location:472 → 536

FYVE; FYVE zinc finger

cl21455
Location:56 → 289

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RNA

XR_002455657.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394937.1 Reference GRCz11 ALT_DRER_TU_1

Range

183286..197259

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021472906.1 → XP_021328581.1 zinc finger FYVE domain-containing protein 1 isoform X2

UniProtKB/TrEMBL

A0A8M9Q1Q2

Conserved Domains (1) summary

cl21455
Location:56 → 289

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases